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KMID : 1132720070050040194
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Genomics & Informatics
2007 Volume.5 No. 4 p.194 ~ p.195
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RGISS: Rice (Oryza sativa L. ssp. japonica) Genome Information Service System
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Lee Dae-Sang
Seo Hwa-Jung
Hahn Jang-Ho
Kong Eun-Bae
Park Kie-Jung
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Abstract
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We have constructed the Rice Genome Information Service System (RGISS), which is an information service system of the Oryza sativa L. ssp. japonica (rice) genome, using the released version of rice Build 3.0 pseudomoleculesbased on the Ensembl architecture. The nonredundantlibrary, composed of 3,360 clones of BACs, PACs, and fosmids, was used to construct supercontigs. RGISS contains 50,717 annotated genes from GenBank, 56,161 predicted genes from FgeneSH, and
information on 9,587 markers, which includes STS, SSR, and EST-based RFLP. The 20,180 ESTs sequenced by the Korea National Institute of Agricultural Biotechnology (NIAB) were aligned and mapped into 168,792 exons. By gene ontology analysis, the classified protein numbers in the rice genome were 6158, 4531, and 12,364 proteins, which were mapped to molecular function, cellular component, and biological process, respectively.
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KEYWORD
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rice, annotation, Ensembl, EST, marker
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FullTexts / Linksout information
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Listed journal information
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